As a libertarian, if it were a perfect world, I think subsidies should be abolished, tax loopholes removed via a flat or "fair" tax system and bailouts should be a thing of the past. I also think welfare and other handouts should be simplified, limited and be only for the truly needy. You will hear from the media that no one will get elected with this platform and sadly there are so many on the dole right now that it is probably true.
As it stands now Mitt Romney is at least talking about removing loopholes. Obama is just adding people to the ranks of the enabled.
As for your article most of it is just garbage and flat out wrong. It is Occupy tripe. Most if not all (I don't have time to refute your list) of the companies paid taxes and much more than any of you and your friends paid, combined. They also employed thousands of people who paid an inordinate amount of taxes, they make products that bring in sales taxes (or are sales taxes only allowed in discussions of how "undocumented" immigrants truly do pay taxes?), they make other markets for the parts that make their products, people to sell their products and people to fix their products, all of who generate more taxes. I am sure you know that though.
Trying to tax offshore profits is absurd as it will force the companies completely offshore. Protectionism might sound good but it NEVER works.
You want more money to come in to the government under the accusations of "fair" then simplify & reduce regulations, cut corporate taxes so they are not the highest in the world, make this a place companies want to do business rather than one they have to do business.